Pinned Repositories
autograd
Efficiently computes derivatives of numpy code.
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
bioc-refcard
Bioconductor cheat sheet
bioc2016eda
BioC2017_TCGA_GTEx_BOF
This repository contains a brief outline for a 'Birds-of-Feather' (BOF) session to meet and discuss analyzing publicly available cancer data from TCGA & GTEx
CellCnn
Representation Learning for detection of phenotype-associated cell subsets
convnetjs
Deep Learning in Javascript. Train Convolutional Neural Networks (or ordinary ones) in your browser.
cytofWorkflow.BioC2017workshop
PADOG
Pathway Analysis with Down-weighting of Overlapping Genes
pacifly's Repositories
pacifly/PADOG
Pathway Analysis with Down-weighting of Overlapping Genes
pacifly/autograd
Efficiently computes derivatives of numpy code.
pacifly/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
pacifly/bioc-refcard
Bioconductor cheat sheet
pacifly/bioc2016eda
pacifly/BioC2017_TCGA_GTEx_BOF
This repository contains a brief outline for a 'Birds-of-Feather' (BOF) session to meet and discuss analyzing publicly available cancer data from TCGA & GTEx
pacifly/CellCnn
Representation Learning for detection of phenotype-associated cell subsets
pacifly/convnetjs
Deep Learning in Javascript. Train Convolutional Neural Networks (or ordinary ones) in your browser.
pacifly/cytofWorkflow.BioC2017workshop
pacifly/d3heatmap
A D3.js-based heatmap htmlwidget for R
pacifly/DeviumWeb
Interactive multivariate data analysis in R implemented in shiny.
pacifly/fadapa
FAstqc DAta PArser - A minimal parser to parse FastQC output data.
pacifly/genomics
A collection of scripts and notes related to genomics and bioinformatics
pacifly/hypergrad
Exploring differentiation with respect to hyperparameters
pacifly/illuminati
scripts to automate illumina secondary analysis pipeline
pacifly/labs
Scripts for HarvardX courses: PH525x
pacifly/LongReadBigWig
pacifly/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
pacifly/networkD3
Tools for creating D3 JavaScript network graphs from R
pacifly/neuralnetworks
java deep learning algorithms and deep neural networks with gpu acceleration
pacifly/polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
pacifly/py12306
12306.cn Python 订票程序
pacifly/pytorch-GAT
My implementation of the original GAT paper (Veličković et al.). I've additionally included the playground.py file for visualizing the Cora dataset, GAT embeddings, an attention mechanism, and entropy histograms. I've supported both Cora (transductive) and PPI (inductive) examples!
pacifly/restfulSE
demonstration of SummarizedExperiment with assay component retrieved from remote HDF5 server
pacifly/SPIA
Signaling Pathway Impact Analysis using combined evidence of pathway over-representation and unusual signaling perturbations
pacifly/testCapecod
pacifly/Theano-Tutorials
Bare bones introduction to machine learning from linear regression to convolutional neural networks using Theano.
pacifly/torch-autograd
Autograd automatically differentiates native Torch code
pacifly/ubu
UNC-Chapel Hill Bioinformatics Utilities
pacifly/voomst
Variance stabilizing transformation with limma-voom for large-scale RNA-seq datasets