CTCNRangoli is a package for multiple customized color palettes that can be used with any ggplot object.
To install the CTCNRangoli package from GitHub, you need the devtools or remotes package. If you don’t have it installed yet, you can install it using:
install.packages("devtools")
# or
install.packages("remotes")
# Using devtools
devtools::install_github("palbioinfor/CTCNRangoli")
# or using remotes
remotes::install_github("palbioinfor/CTCNRangoli")
After installation, you can load the package and start using it.
Below is an example demonstrating how to use this package function to visualize scRNA data with a Seurat object.
library(CTCNRangoli)
library(Seurat)
load("pancreas.integrated.three.rda")
DimPlot(pancreas.integrated_, group.by = "tech")+CTCN_chroma("quad1")
DimPlot(pancreas.integrated_, group.by = "celltype")+CTCN_chroma("pal_victoria")
DimPlot(pancreas.integrated_, group.by = "celltype")+CTCN_chroma("pal_pallavi")