Pinned Repositories
coral
pamservice
A new version of the pamservice tool
PTK_C1T1C2T2_template
Tercen workflow for PTK C1T1C2T2 analysis
PTK_CT1T2T3_template
Tercen workflow for PTK C1T1T2T3 analysis
STK_C1T1C2T2_template
Tercen workflow for STK C1T1C2T2 analysis
STK_CT1T2T3_template
Tercen workflow for STK C1T1T2T3 analysis
STK_CV_Export_app
Tercen app for CV export of STK experiments
Training_PTK_C1T1C2T2
Tercen training workflow for PTK C1T1C2T2 analysis
Training_PTK_C1T1T2T3
Tercen training workflow for PTK C1T1T2T3 analysis
Training_STK_C1T1C2T2
Tercen training workflow for STK C1T1C2T2 analysis
PamGene's Repositories
pamgene/PTK_C1T1C2T2_template
Tercen workflow for PTK C1T1C2T2 analysis
pamgene/PTK_CT1T2T3_template
Tercen workflow for PTK C1T1T2T3 analysis
pamgene/STK_C1T1C2T2_template
Tercen workflow for STK C1T1C2T2 analysis
pamgene/STK_CT1T2T3_template
Tercen workflow for STK C1T1T2T3 analysis
pamgene/app-library
pamgene/barcode_operator
Tercen operator for reading components of 9-digit PamChip Barcode
pamgene/CORALcli
Very basic R package to make CORAL trees, specifically for reporting
pamgene/dascombat_shiny_fit_operator
The Shiny version of the DasCOMBAT fit operator.
pamgene/detect_outliers_operator
Tercen operator for outlier detection
pamgene/foldchange_app
Calulates the ratio (fold change) between a control and treatment condition.
pamgene/image_analysis_PTK_afterwash_template
PTK image analysis afterwash template
pamgene/image_analysis_PTK_prewash_template
PTK image analysis PreWash Template
pamgene/image_analysis_STK_template
STK image analysis template
pamgene/MTvC_app
Performs a statistical comparison of one control vs muliptle treatment conditions
pamgene/non_standard_apps_template
A template with all apps and operators that we do not use in the standard templates.
pamgene/pamcloud
pamgene/pamstation_app_settings
Custom app settings for pamstation
pamgene/pearson_operator
Pearson correlation
pamgene/pg_plsda_classifier_operator
pamgene/pgfcs
pamgene/pgmulticore
pamgene/QC_PTK_app
Quality control of Tyrosine PamChip measurements
pamgene/shinyvsn
pamgene/SimpleHeatmap_app
Generates heatmaps ordered by row mean.
pamgene/ttest_app
Determines if there is a significant difference between the means of two groups
pamgene/ttest_paired_app
Determines if there is a significant difference between the means of two groups of matched pairs
pamgene/UKA_barplot_app
creates barplots of kinase FC for one comparison.
pamgene/UKA_MTvC_app
pamgene/UKA_TGC_app
pamgene/vsn_shiny_operator
Normalization: VSN (VSN with shiny interface app)