pangarissara

pangarissara's Stars

• DavidAnson/markdownlint

  A Node.js style checker and lint tool for Markdown/CommonMark files.

  Language:JavaScript4.7k721

• rrwick/Badread

  a long read simulator that can imitate many types of read problems

  Language:Python16822

• pysam-developers/pysam

  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

  Language:Cython776275

• nf-core/bacass

  Simple bacterial assembly and annotation pipeline

  Language:Nextflow6041

• apache/groovy

  Apache Groovy: A powerful multi-faceted programming language for the JVM platform

  Language:Java5.2k1.9k

• nextflow-io/patterns

  A curated collection of Nextflow implementation patterns

  Language:Nextflow33071

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.3k157

• nanoporetech/medaka

  Sequence correction provided by ONT Research

  Language:Python40974

• isovic/racon

  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

  Language:C++26948

• kishwarshafin/pepper

  PEPPER-Margin-DeepVariant

  Language:Python24242

• artic-network/fieldbioinformatics

  The ARTIC field bioinformatics pipeline

  Language:Python11168

• yukiteruono/pbsim2

  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores

  Language:C++6915

• nextflow-io/training

  Nextflow training material

  Language:Nextflow125112

• genome-in-a-bottle/giab_data_indexes

  This repository contains data indexes from NIST's Genome in a Bottle project.

  Language:Roff23671