paolabc
Biologist & Bioinformatician; MS. Genetics and Molecular Biology - UFRGS; Ph.D. Student - The University of Texas at Austin "Learning is a never ending journey"
The University of Texas at AustinUnited States
Pinned Repositories
biovars
Tool for joining all the bioinfo-hcpa's variant information retrieval APIs.
pyABraOM
A Python API to comunicate with ABraOM database.
advanced_training
Advanced Scikit-learn training session
alphafold
Open source code for AlphaFold.
awesome-riboseq
A list of bioinformatic tools for working with Ribo-Seq data
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
CHM13
The complete sequence of a human genome
rosalind-solutions-bioinfo
ValidatedSgRNADatabases
paolabc's Repositories
paolabc/rosalind-solutions-bioinfo
paolabc/awesome-riboseq
A list of bioinformatic tools for working with Ribo-Seq data
paolabc/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
paolabc/CHM13
The complete sequence of a human genome
paolabc/cryopros
paolabc/DReAmiR
miRNA targets differential regulation analysis
paolabc/Enrichment-Analysis
From RNA-seq raw reads to enriched pathways by DEGs
paolabc/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
paolabc/evo
DNA foundation modeling from molecular to genome scale
paolabc/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
paolabc/GeneSCF
Gene Set Clustering based on Functional annotation
paolabc/gget
š§¬ gget enables efficient querying of genomic reference databases
paolabc/IntaRNA
Efficient target prediction incorporating accessibility of interaction sites
paolabc/METAFlux
paolabc/mgatk
mgatk: mitochondrial genome analysis toolkit
paolabc/my-brain-seq
myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry
paolabc/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
paolabc/openmmforcefields
CHARMM and AMBER forcefields for OpenMM (with small molecule support)
paolabc/paolabc
paolabc/ReadKnead
Knead your sequencing reads before baking: clips, demultiplexes, filters and trims reads
paolabc/RNAseqChef
Web app for automated, systematic, and integrated RNA-seq differential expression analysis
paolabc/SBGNview
paolabc/scFEA
single cell Flux Estimation Analysis (scFEA) Try the below web server!
paolabc/scGate
marker-based purification of cell types from single-cell RNA-seq datasets
paolabc/scMetabolism
Quantifying metabolism activity at the single-cell resolution
paolabc/scMF-across-AD-and-stroke
paolabc/scpa_paper
scripts to replicate main figures of the paper
paolabc/stat_rethinking_2023
Statistical Rethinking Course for Jan-Mar 2023
paolabc/WGCNA_tutorial
A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
paolabc/zebrafish-RNAseq
RNA-seq processing pipeline for zebrafish dataset using bash scripts and SLURM array jobs.