/mergeSVvcf

Python package and routines for merging SV VCF files

Primary LanguagePythonMIT LicenseMIT

Merge SV VCFs

This set of routines merges SV VCF files by calls, labeling calls by the callers that made them in an INFO field, Callers=. Most of the work goes into normalizing SV calls, which are treated as paired of breakpoints that are equal if they fall within a user-specified window.

Known Issues

  • INFO and FORMAT merged for multiple from same caller with only be for last record
  • Individual Caller Genotype not kept