parashardhapola

cellradar

cellradar

nabo

Python library to perform memory efficient cross-sample cell mapping using single cell transciptomics (scRNA-Seq) data

pscheduler

Scheduler for launching jobs on multiple connected machines

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

sgtsnepi

Swift Neighbor Embedding of Sparse Stochastic Graphs

topacedo

parashardhapola/scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

parashardhapola/nabo

Python library to perform memory efficient cross-sample cell mapping using single cell transciptomics (scRNA-Seq) data

parashardhapola/pscheduler

Scheduler for launching jobs on multiple connected machines

parashardhapola/cellradar

cellradar

parashardhapola/sgtsnepi

Swift Neighbor Embedding of Sparse Stochastic Graphs

parashardhapola/topacedo

parashardhapola/AnaViz

A visual analysis of scRNA-Seq data

parashardhapola/awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

parashardhapola/bartide

parashardhapola/bimm05

demo repo

parashardhapola/cellradar-backend

Backend server for CellRadar

parashardhapola/cool_project

Testing Github for BIMM05

parashardhapola/linux

Linux kernel source tree

parashardhapola/SCALEX

Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space

parashardhapola/scarf_vignettes

Tutorials and workflows for single-cell genomics data analysis using Scarf

parashardhapola/scc-bioinfo-workshops-19

Material for worskhop series: 'Current topics in bioinformatics' in Lund Stem Cell Center. Organised by Research School in Stem Cell Biology & StemTherapy Bioinformatics Core Facility.

parashardhapola/umap

Uniform Manifold Approximation and Projection