This repo host the results and modules for our The landscape of human SVA retrotransposons. We are also hosting a catalog website here: https://parklab.github.io/SVA_catalog/.
This folder contains the SVA insertions curated in this study on the 1000G, HGDP and SGDP deep sequenced short-read cohorts.
This folder contains the long-reads results, including the constructed SVA insertion sequences, annotations, hexamer and VNTR expansion, and the built phylogeny tree, in this study.
This folder contains the released results from other studies.
This folder contains the reference genome SVA annotations.
This folder contains the comparison and validation results.
This folder shows how to run the SVA annotation refinement module developed in this study.
If you are using the results or run SVA annotation with our module, please cite our paper: