/contact_trace

Primary LanguageR

Inferring generation-interval distributions from contact-tracing data

Sang Woo Park, David Champredon, and Jonathan Dushoff

  • R: contains .R files for epidemic simulations and generation-interval estimations
  • sim: contains results of epidemic simulations and parameters used for simulations
  • analysis: contains results of analyses of epidemic simulations
  • fig: contains .R files for figures in the manuscript
    • Figure 1: individual_and_population.R
    • Figure 2: temporal_effect.R
    • Figure 3: local_effect.R
    • Figure 4: diagram.tex
    • Figure 5: cmp.R
    • Figure A.1: cmp_small.R
    • Figure A.2: cmp_seminr.R
    • Figure A.3: cmp_underreport.R
    • Figure A.4: full_coverage_fig.R
  • data: contains the network file
  • doc: contains manuscript files