parthoBTK

Adjunct Professor | Researcher| Scientist | Computational Biologist & Bioinformatician https://parthosen.github.io/ https://github.com/parthosen

German Heart Center - Technical University of MunichMunich, Germany

Pinned Repositories

AGORA
The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gut microbes through the use of issues. Please note that pull requests will be automatically closed.
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ancient-microbiome-denovo
Language:Shell00
api
Website holding MSDK API
Language:HTML00
Bile_acid_AD
Language:MATLAB00
biobakery
bioBakery tools for meta'omic profiling
Language:Shell00
biodatascience
This is the web resource for NTU's Bio-Data Science and Education Laboratory
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Metabolomics2019
Tutorials
12
msdk
MSDK source code repository
Language:Java10
mzmine3-1
MZmine 3 source code repository
Language:Java10
Personalized_Liver_Models
Scripts and wrappers for GSMM
Language:MATLAB11

parthoBTK's Repositories

parthoBTK/mzmine3-1
MZmine 3 source code repository
Language:Java10
parthoBTK/Personalized_Liver_Models
Scripts and wrappers for GSMM
Language:MATLAB11
parthoBTK/ancient-microbiome-denovo
Language:Shell00
parthoBTK/Bile_acid_AD
Language:MATLAB00
parthoBTK/biobakery
bioBakery tools for meta'omic profiling
Language:Shell00
parthoBTK/biodatascience
This is the web resource for NTU's Bio-Data Science and Education Laboratory
00
parthoBTK/Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
parthoBTK/Context_Specific_Models_from_GeMS
A systematic evaluation of methods for tailoring genome-scale metabolic models
parthoBTK/DeepMet
parthoBTK/Diab_GSMM_T1D
Scripts for data analysis and GSMM – Diabimmune T1D study
parthoBTK/export2graphlan
Conversion software tool for producing both annotation and tree files for GraPhlAn
parthoBTK/FreeCodeCamp-Pandas-Real-Life-Example
1
parthoBTK/Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
parthoBTK/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
parthoBTK/humann
HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
parthoBTK/IRFinder
Scheduled for testing
parthoBTK/iSLS9
iSLS9 data analysis workshop
Language:R1 0
parthoBTK/lefse
parthoBTK/matplotlib
matplotlib: plotting with Python
parthoBTK/metadeconfoundR
parthoBTK/ml-webinar
Webinar: Machine Learning on Puhti
parthoBTK/panphlan
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
parthoBTK/parthosen.github.io
My personal website
parthoBTK/preprocessing
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
parthoBTK/python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
parthoBTK/ReactomeGSA
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
parthoBTK/SerumMetabolomePredictions
parthoBTK/symatrial
Analysis code for the symatrial project
parthoBTK/TEDDY_Multi-Omics_Integration
parthoBTK/Tutorials
Code for some of my tutorials