pastranacl

brazier_press

Simulation of bent tubes under pressure

cheatsheets

Cheat sheets for common command line programs

cuda_lennard_jones

Lennard jones interactions of particles in a tube

dwell-time-analysis

Dwell time analysis of single-molecule force-spectroscopy data

fs-hmm

This project uses hidden Markov models to decode the most probable states from force-spectroscopy measurements of extension

jaxsim

Exercises to develop the skills to implement Brownian dynamics simulations exploiting the GPU capabilities of JAX

lattice_gas

Lattice gas model of water including interaction with surfaces

meshgen

This is a Python module wrapping the Advancing Front Surface Reconstruction algorithm from CGAL by using Ctypes. Obtain triangulated surfaces defined as numpy arrays.

naive_bayes_whatsapp_group

Naive Bayes analysis of conversations from WhatsApp groups

reinforced_tube_helix

Formation of helices in pressurized tubes with helical reinforcement

pastranacl/meshgen

This is a Python module wrapping the Advancing Front Surface Reconstruction algorithm from CGAL by using Ctypes. Obtain triangulated surfaces defined as numpy arrays.

pastranacl/brazier_press

Simulation of bent tubes under pressure

pastranacl/cheatsheets

Cheat sheets for common command line programs

pastranacl/cuda_lennard_jones

Lennard jones interactions of particles in a tube

pastranacl/dwell-time-analysis

Dwell time analysis of single-molecule force-spectroscopy data

pastranacl/fs-hmm

This project uses hidden Markov models to decode the most probable states from force-spectroscopy measurements of extension

pastranacl/jaxsim

Exercises to develop the skills to implement Brownian dynamics simulations exploiting the GPU capabilities of JAX

pastranacl/lattice_gas

Lattice gas model of water including interaction with surfaces

pastranacl/naive_bayes_whatsapp_group

Naive Bayes analysis of conversations from WhatsApp groups

pastranacl/pastranacl.github.io

Webpage: Optimization social distance

pastranacl/pycuda_exercises

pastranacl/reinforced_tube_helix

Formation of helices in pressurized tubes with helical reinforcement

pastranacl/sc_dna_mc

Monte Carlo simulations of a supercoiled polymer

pastranacl/thomson_problem

Thomson's problem: optimal distribution of particles on a spherical shell