patena

basic-bioinf-utilities

Basic bioinformatics utilities by Weronika - useful standalone, and needed for many other packages.

combinatorial-deconvolution

combinatorial-pooling

deepseq-processing

Preprocessing and alignment of deep-sequencing files (mostly for Jonikas lab mutant pools).

Li-Patena-2019

Code used for the paper "A genome-wide algal mutant library and functional screen identifies genes required for eukaryotic photosynthesis" by Li, Patena et al.

Li-Zhang-Patena-2015

Code used for the paper "An indexed, mapped mutant library enables reverse genetics studies of biological processes in Chlamydomonas reinhardtii" by Li, Zhang, Patena et al.

tagging_primer_design

Code and data used for generating primers for the paper "A spatial interactome reveals the anatomy of the algal CO2 concentrating mechanism" by Mackinder et al, Cell 2017

scikit-bio

Core objects, functions and statistics for working with biological data in Python.

sprint_tutorial

Mock repository to teach people to contribute to open source

scikit-bio

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

patena/scikit-bio

Core objects, functions and statistics for working with biological data in Python.

patena/sprint_tutorial

Mock repository to teach people to contribute to open source