Pinned Repositories
BART_hourly_ridership
bioconda-recipes
Conda recipes for the bioconda channel.
c_parapsilosis_analysis
EukRep
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
EukRep_Pipeline
jupyter_basics
example notebooks
mgx-sim
Utilities for splitting and simulating genomes from metagenomes.
NCBI_contamination_fix
patrickwest.github.io
PhaVa
Identifying phase variation with long reads
patrickwest's Repositories
patrickwest/EukRep
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
patrickwest/EukRep_Pipeline
patrickwest/PhaVa
Identifying phase variation with long reads
patrickwest/NCBI_contamination_fix
patrickwest/BART_hourly_ridership
patrickwest/bioconda-recipes
Conda recipes for the bioconda channel.
patrickwest/c_parapsilosis_analysis
patrickwest/jupyter_basics
example notebooks
patrickwest/mgx-sim
Utilities for splitting and simulating genomes from metagenomes.
patrickwest/patrickwest.github.io
patrickwest/PhaseFinder
A pipeline to computationally identify invertible DNA regions and quantify their orientations.
patrickwest/pipeCoverage
Quickly calculate coverage of sequences in a .sam file while retaining breadth information