patterja

Computational Biologist @ OHSU

Portland, Oregon

Pinned Repositories

compbio-galaxy-wrappers
OHSU Galaxy wrappers.
Language:Python6 12 1711
bioblend
A Python library for interacting with CloudMan and Galaxy API
Language:Python00
compbio-galaxy-wrappers
OHSU Galaxy wrappers.
Language:Python0 1 00
conda_recipes
Language:Shell00
drug_response
Scripts for drug response
Language:Python00
gr_metrics
Language:R0 0 00
kbmtl
Language:R00
nanoprot
R package for analysis nCounter® Vantage 3D™ Protein Panel for FFPE
Language:R00
nanostring
Language:R00
SMMARTdrugViz
Language:HTML11

patterja's Repositories

patterja/SMMARTdrugViz
Language:HTML11
patterja/bioblend
A Python library for interacting with CloudMan and Galaxy API
Language:Python00
patterja/compbio-galaxy-wrappers
OHSU Galaxy wrappers.
Language:Python0 1 00
patterja/conda_recipes
Language:Shell00
patterja/drug_response
Scripts for drug response
Language:Python00
patterja/gr_metrics
Language:R0 0 00
patterja/kbmtl
Language:R00
patterja/nanoprot
R package for analysis nCounter® Vantage 3D™ Protein Panel for FFPE
Language:R00
patterja/nanostring
Language:R00
patterja/processingGATKoutput
scripts that are useful for whole exome sequencing for GATK best practices pipeline
Language:Python
patterja/ruv-useR2018
Language:Jupyter Notebook
patterja/shinyChipseq_IDR
Language:R
patterja/shinyChipseq_Sample_Comparison
Language:R
patterja/shinyCNV_Method_Comparison_Onesample
Language:R1 0
patterja/shinyCNV_Sample_Comparison
Language:R
patterja/smmartprediction
Language:R
patterja/tatlowpiccolo_pipeline
RNAseq pipeline
Language:Common Workflow Language