pattonw
Software engineer contractor specializing in deep learning for microscopy 🙂
Seattle WA, USA
Pinned Repositories
CATMAID-autoproofreader
cnnectome.conversion
scripts and helper functions for converting trained tensorflow cnnectome models to pytorch
dacapo
mwatershed
A rusty mutex watershed
mwatershed_agglom
scripts for blockwise global agglomeration using mutex watershed
napari-affinities
neurolight
rust-pyn5
Wrap rust-n5 functionality in a python importable library
sarbor
A structure for combining a 3D arbor with a dense volumetric segmentation
zebrafish_experiments
scripts and configs for running zebrafish experiments
pattonw's Repositories
pattonw/mwatershed
A rusty mutex watershed
pattonw/rust-pyn5
Wrap rust-n5 functionality in a python importable library
pattonw/napari-affinities
pattonw/zebrafish_experiments
scripts and configs for running zebrafish experiments
pattonw/mwatershed_agglom
scripts for blockwise global agglomeration using mutex watershed
pattonw/cnnectome.conversion
scripts and helper functions for converting trained tensorflow cnnectome models to pytorch
pattonw/dacapo
pattonw/sarbor
A structure for combining a 3D arbor with a dense volumetric segmentation
pattonw/tqdm
A Fast, Extensible Progress Bar for Python and CLI
pattonw/augment
Simple elastic augmentation for ND arrays
pattonw/contextnet
library and scripts for training models with arbitrarily large context
pattonw/core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
pattonw/daisy
Block-wise task scheduling for large nD volumes.
pattonw/everything-will-be-fine
Semantic Segmentation DL@MBL-2023 team
pattonw/fibsem-tools
Tools for handling FIB-SEM data and annotations
pattonw/funlib.geometry
A package for Coordinates, Rois and common operations in Coordinate spaces
pattonw/funlib.learn.torch
pattonw/funlib.show.neuroglancer
Scripts and helpers for the neuroglancer WebGL viewer.
pattonw/gunpowder
A library to facilitate machine learning on multi-dimensional images.
pattonw/lsd
🌈
pattonw/model-specs
Some example model specs for use with napari plugins
pattonw/napari-pssr
napari plugin for pssr
pattonw/op-n2v
out painting noise to void
pattonw/py-swc-parser
An swc parser for python.
pattonw/secret-santa
Some scripts to create secret santa assignments
pattonw/segment_rs
rust implementations of funlib.segment cython code
pattonw/spec-bioimage-io
Specification for the bioimage.io model description file.
pattonw/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
pattonw/tracking
pattonw/yoshi_experiments