pauleve/MPBNs-SI-Notebooks

Notebooks demonstraing Most Permissive Boolean Networks

The notebooks can be visualized and downloaded at https://nbviewer.jupyter.org/github/pauleve/MPBNs-SI-Notebooks/tree/main.

They can be executed interactively within the CoLoMoTo Docker version 2020-07-01:

• online, using myBinder service at https://mybinder.org/v2/gh/pauleve/MPBNs-SI-Notebooks/main
• or on your computer, provided you have Docker and Python 3 installed:
  1. download the notebooks from https://github.com/pauleve/MPBNs-SI-Notebooks/archive/main.zip and extract the zip file
  2. execute the following commands, where notebooks is the folder in which you extracted the notebooks

  sudo pip install -U colomoto-docker # you may have to use pip3 instead of pip
  colomoto-docker -V 2020-07-01 --bind notebooks
  

The notebooks on the Python library mpbn, see the documentation for usage and examples at https://mpbn.readthedocs.io.