Pinned Repositories
Brown-et-al_PDAC-hypoxia-EMT
Code for the analysis of publicly available omics data in the paper by Brown et al. entitled "A Histone Methylation–MAPK Signaling Axis Drives Durable Epithelial–Mesenchymal Transition in Hypoxic Pancreatic Cancer." (Published in Cancer Research; article linked below.)
multicell-synthetic-cell-signaling-abm
Repository for the models reported in "A computational modeling approach for predicting multicell patterns based on signaling-induced differential adhesion" (https://doi.org/10.1101/2021.08.05.455232)
Myers-Furcht-et-al_GAB1-SHP2-PDE-model
Code for the paper by Myers and Furcht et al. entitled "A spatially resolved EGFR signaling model predicts the length scale of GAB1-SHP2 complex persistence." (Pre-print available on bioRxiv, linked below.)
Arras-et-al-AJCR-2021_GSVA-BCAR3-correlations
Repository for the code needed to reproduce Figure 6A from Arras et al. (ACJR 2021, PMID: 34765292)
Brown-et-al_PDAC-hypoxia-EMT
Code for the analysis of publicly available omics data in the paper by Brown et al. entitled "A Histone Methylation–MAPK Signaling Axis Drives Durable Epithelial–Mesenchymal Transition in Hypoxic Pancreatic Cancer." (Published in Cancer Research; article linked below.)
Myers-Furcht-et-al_GAB1-SHP2-PDE-model
Code for the paper by Myers and Furcht et al. entitled "A spatially resolved EGFR signaling model predicts the length scale of GAB1-SHP2 complex persistence". (Pre-print available on bioRxiv, linked below.)
Surve-et-al-MBoC-2019_RAF1-model
Code for the mechanistic computational model described in Surve et al. (MBoC 2019, https://doi.org/10.1091/mbc.E18-08-0512, PMID 30586319).
TidierStrings.jl
Tidier string transformations in Julia, modeled after the stringr R package.
pauljmyers's Repositories
pauljmyers/Arras-et-al-AJCR-2021_GSVA-BCAR3-correlations
Repository for the code needed to reproduce Figure 6A from Arras et al. (ACJR 2021, PMID: 34765292)
pauljmyers/Brown-et-al_PDAC-hypoxia-EMT
Code for the analysis of publicly available omics data in the paper by Brown et al. entitled "A Histone Methylation–MAPK Signaling Axis Drives Durable Epithelial–Mesenchymal Transition in Hypoxic Pancreatic Cancer." (Published in Cancer Research; article linked below.)
pauljmyers/Myers-Furcht-et-al_GAB1-SHP2-PDE-model
Code for the paper by Myers and Furcht et al. entitled "A spatially resolved EGFR signaling model predicts the length scale of GAB1-SHP2 complex persistence". (Pre-print available on bioRxiv, linked below.)
pauljmyers/Surve-et-al-MBoC-2019_RAF1-model
Code for the mechanistic computational model described in Surve et al. (MBoC 2019, https://doi.org/10.1091/mbc.E18-08-0512, PMID 30586319).