paulranum11

paulranum11's Stars

• langmead-lab/monorail-external

  examples to run monorail externally

  Language:Shell155

• paulranum11/SPLiT-Seq_demultiplexing

  An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

  Language:Python268

• CSSEGISandData/COVID-19

  Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

  29.1k18.4k

• nanoporetech/bwapy

  Python bindings to bwa mem

  Language:Python3212

• EpistasisLab/tpot

  A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  Language:Python9.8k1.6k

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.8k424

• Appsilon/shiny.semantic

  Shiny support for powerful Fomantic UI library.

  Language:R50297

• Xinglab/DARTS

  Deep-learning Augmented RNA-seq analysis of Transcript Splicing

  Language:Python11032

• elsiklab/sashimiplot

  A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data

  Language:JavaScript143

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.9k508

• Wikinaut/agrep

  AGREP - approximate GREP for fast fuzzy string searching. Files are searched for a string or regular expression, with approximate matching capabilities and user-definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona. ISC open source license since Sept. 2014.

  Language:C30250