Pinned Repositories
2021-modle-paper-001-data-analysis
Data analysis code for: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions": https://doi.org/10.1186/s13059-022-02815-7
2022-mcf10a-cancer-progression
Data analysis code for: "Loss of multi-level 3D genome organization during breast cancer progression"
2024-stripepy-paper
This repository contains the source code used for the data analysis for StripePy's manuscript
ci-docker-images
Repository to build and host CI Docker images for various projects
hictk
Blazing fast toolkit to work with .hic and .cool files
hictkpy
Python bindings for hictk: read and write .cool and .hic files directly from Python
hictkR
R bindings for hictk: read .cool and .hic files directly from R
modle
High-performance stochastic modeling of DNA loop extrusion interactions
NCHG
StripePy
StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning
paulsengroup's Repositories
paulsengroup/hictk
Blazing fast toolkit to work with .hic and .cool files
paulsengroup/modle
High-performance stochastic modeling of DNA loop extrusion interactions
paulsengroup/hictkpy
Python bindings for hictk: read and write .cool and .hic files directly from Python
paulsengroup/hictkR
R bindings for hictk: read .cool and .hic files directly from R
paulsengroup/StripePy
StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning
paulsengroup/2021-modle-paper-001-data-analysis
Data analysis code for: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions": https://doi.org/10.1186/s13059-022-02815-7
paulsengroup/2022-mcf10a-cancer-progression
Data analysis code for: "Loss of multi-level 3D genome organization during breast cancer progression"
paulsengroup/ci-docker-images
Repository to build and host CI Docker images for various projects
paulsengroup/2022-confined-polymer-paper-data-analysis
Data analysis code for: "Association of flexible filaments under different confinement geometries"
paulsengroup/2023-hictk-paper
Repository hosting code used to generate the benchmarks and data for hictk's paper
paulsengroup/2024-stripepy-paper
This repository contains the source code used for the data analysis for StripePy's manuscript
paulsengroup/NCHG