paulshuker/coppafish

COmbinatorial Padlock-Probe-Amplified Fluorescence In Situ Hybridization

coppafish

Documentation

• Homepage
  • Installation
  • Updating
• Usage
  • Input data
    • Data format
    • Metadata
    • Code book
    • Configuration
  • Running
• Method
  • Scale
  • Extract
  • Filter
  • Find spots
  • Register
  • Stitch
  • Call spots
  • OMP
• Diagnostics
  • Viewer
  • Registration viewer
  • PDF Diagnostics
  • Viewing images
• Advanced Usage
• Troubleshoot
• Glossary

For more information on coppafish's method, please see the documentation here (some of this information will be outdated).