pavlin-policar/openTSNE

Issues

• How to develop

  #262 opened 3 months ago by hageldave
  1

• Tests fail: ImportError: attempted relative import with no known parent package

  #237 opened 2 years ago by yurivict
  8

• oldest-supported-numpy depricated

  #257 opened 3 months ago by sdamrich
  3

• missing hardening flags on Debian building

  #261 opened 4 months ago by yuzibo
  1

• [Windows] saving/loading TSNEEmbedding objects to pickle, Directory error

  #210 opened 2 years ago by tomcsojn
  8

• Pickling/unpickling embeddings object does not work on Windows

  #260 opened 5 months ago by austinpatrickm
  2

• [Windows] saving/loading TSNEEmbedding objects to pickle, Directory error

  #244 opened 5 months ago by Aurelien-Pelissier
  6

• Advice on how to use this Repo with sparse data

  #259 opened 5 months ago by KukumavMozolo
  5

• Allow KNNIndex classes to take **kwargs arguments and pass them to KNN library

  #256 opened 8 months ago by dkobak
  2

• import errer

  #253 opened a year ago by xqfJohn
  1

• `utils` import error in example notebooks

  #250 opened a year ago by sbembenek18
  1

• Question on initialization

  #252 opened a year ago by sbembenek18
  4

• Test failure on i386

  #247 opened a year ago by utkarsh2102
  9

• Problem with data from CSV file

  #251 opened a year ago by sbembenek18
  7

• Negative reported KL divergence for dof>1

  #238 opened a year ago by dkobak
  4

• Cannot install on Mac M1

  #248 opened a year ago by bravma
  1

• process crashes when /tmp gets full

  #240 opened 2 years ago by s-baumann
  2

• Question about SGD method used

  #241 opened 2 years ago by rpadmanabhan
  2

• Unable to use custom callable metric

  #239 opened 2 years ago by tctco
  2

• Barnes-Hut optimization with the default learning rate collapses on small datasets

  #233 opened 2 years ago by dkobak
  4

• Bug: running optimize() multiple times produces different result compared to running it once

  #228 opened 2 years ago by dkobak
  3

• Extend openTSNE to specific purposes

  #232 opened 2 years ago by Yangxiaojun1230
  4

• Failed to install from source

  #230 opened 2 years ago by Yangxiaojun1230
  3

• Switching spectral initialization to sklean.manifold.SpectralEmbeddings

  #223 opened 2 years ago by dkobak
  14

• Adding tiny amount of noise to PCA/spectral init to prevent points from overlapping

  #224 opened 2 years ago by dkobak
  0

• Missed reference

  #219 opened 2 years ago by rozyangno
  2

• `latest` version of ReadTheDocs not rendering Python code

  #222 opened 2 years ago by MattScicluna
  4

• Tutorials do not show ipynb code

  #227 opened 2 years ago by stanleyjs
  2

• Better support for large late exaggeration

  #218 opened 2 years ago by dkobak
  1

• Create an affinity object with precomputed affinity matrix

  #216 opened 2 years ago by dkobak
  1

• pandas DataFrames KeyError

  #182 opened 2 years ago by fsvbach
  12

• precomputed knn

  #214 opened 2 years ago by jlmelville
  2

• The docstring on pickling Annoy objects seems to be out of date

  #211 opened 2 years ago by dkobak
  1

• macosko_2015.pkl.gz file

  #212 opened 2 years ago by yingweima2022
  1

• Numpy incompatibility

  #213 opened 2 years ago by ll-portes
  2

• How to download 'macosko_2015.pkl.gz' & How to save plot result as figures file

  #209 opened 3 years ago by buaalyx
  0

• Warning message from pynndescent

  #192 opened 3 years ago by ivan-marroquin
  3

• transform() or prepare_partial() with precomputed distances?

  #202 opened 3 years ago by juleskuehn
  1

• Transform on BH not preserving settings?

  #204 opened 3 years ago by tomcsojn
  1

• Compilation fails on Python 3.10

  #205 opened 3 years ago by bnavigator
  0

• how can I use on my own image dataset？

  #203 opened 3 years ago by Tomlk
  1

• how to get embedding in np.array format

  #201 opened 3 years ago by morningphase
  2

• Cannot pass random_state to PerplexityBasedNN when using Annoy

  #189 opened 3 years ago by jnboehm
  14

• Annoy object should be pickable

  #185 opened 3 years ago by PrimozGodec
  0

• random state in .optimize()

  #191 opened 3 years ago by ritagonmar
  3

• Default learning rate in .optimize()

  #190 opened 3 years ago by ritagonmar
  2

• set_perplexity doesn't respect symmetrize parameter

  #184 opened 3 years ago by pavlin-policar
  0

• Uniform affinity missing from the docs

  #193 opened 3 years ago by dkobak
  1

• ErrorLogger in docs

  #186 opened 3 years ago by rumaak
  2

• Using a custom P matrix

  #183 opened 4 years ago by lihenryhfl
  2