Pinned Repositories
boards
cevodata
cevomod
ngs_workflows
Set of workflows, usually written in Snakemake, for NGS data analysis
omicsTools
Set of classes, codes and scripts which I use for Omics data analysis
pawelqs.github.io
readthis
verbose
Manage verbose levels for R packages
pawelqs's Repositories
pawelqs/cevomod
pawelqs/boards
pawelqs/cevodata
pawelqs/ngs_workflows
Set of workflows, usually written in Snakemake, for NGS data analysis
pawelqs/pawelqs.github.io
pawelqs/readthis
pawelqs/verbose
Manage verbose levels for R packages
pawelqs/BLCA_evolution_animations
pawelqs/omicsTools
Set of classes, codes and scripts which I use for Omics data analysis
pawelqs/bioconda-recipes
Conda recipes for the bioconda channel.
pawelqs/cevodata.tcga
pawelqs/cevomod.spatial
pawelqs/cevosim
pawelqs/CliP
Clonal structure identification through penalizing pairwise differences
pawelqs/clonalityParsers
R package for parsing SNV and CNV calls for clonality analysis
pawelqs/gatherrhtmls
R package to pick up multiple HTML reports into a single website
pawelqs/GATK_workflow
pawelqs/nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
pawelqs/ngs_flows
pawelqs/qsmisc
pawelqs/quality_control_CellRanger
Snakemake workflow to run some basic quality control programs