pb-cdunn/FALCON-make

This is one way to install the FALCON packages residing in FALCON-integrate:

FALCON-make

These are some ways to install the FALCON packages from a FALCON workspace.

See Installation in the wiki.

Types of installation

Simply set $PYTHONUSERBASE. Everything will be installed under that.

(If you insist on using virtualenv or a non --edit pip-install, contact cdunn.)

Dependencies

All those installation types require python3 and pip3.

pip3

Python3 always includes pip3 now.

Anaconda

It can be helpful to install Anaconda first, for a helpful set of Python dependencies. If you do, remember to add your new anaconda2/bin into your $PATH before proceeding.

• https://docs.continuum.io/anaconda/install

extras

Some extra stuff can be installed via make extra

Environment

PYTHONUSERBASE

We recommend that you export PYTHONUSERBASE before running make. Otherwise, your build will (typically) be installed into ~/.local which is fine if you have only one installation.

• https://docs.python.org/3/library/site.html

PATH

Before running tests, you need to add the new bin to your PATH.

export PYTHONUSERBASE=$(python -c 'import site; print site.USER_BASE')
export PATH=${PYTHONUSERBASE}/bin

About the LICENSE

Standard PacBio "Open Source License".