Pinned Repositories
py-ard
HLA ARD Reduction in Python
b-leader
HLA-B Leader Peptide Microservice and Tool
GFE
Gene Feature Enumeration for polymorphic genes
gfe-db
Graph database representing IPD-IMGT/HLA sequence data as GFE
gfe-service
GFE Webservice: Provides REST endpoints to GFE related functions
imgt_biosqldb
The IMGT/HLA sequence data persisted in a BioSQL database
Immuannot
Immuological gene typing and annotation for genome assembly
phycus
Service used for curation of Haplotype Frequency
py-graph-imputation
Graph Imputation
spark-training
Training instructions for apache spark
pbashyal-nmdp's Repositories
pbashyal-nmdp/GFE
Gene Feature Enumeration for polymorphic genes
pbashyal-nmdp/adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
pbashyal-nmdp/amazon-sagemaker-examples
Example notebooks that show how to apply machine learning, deep learning and reinforcement learning in Amazon SageMaker
pbashyal-nmdp/atlantis-example
A simple terraform project to use along with atlantis bootstrap mode
pbashyal-nmdp/CIWD
CIWD data in computable form
pbashyal-nmdp/codebuild-test
Repo to test codebuild
pbashyal-nmdp/control-repo
Puppet test
pbashyal-nmdp/covid-19-data
An ongoing repository of data on coronavirus cases and deaths in the U.S.
pbashyal-nmdp/covid-sanity
Aspires to help the influx of bioRxiv / medRxiv papers on COVID-19
pbashyal-nmdp/d3-for-the-impatient
Examples and code for the book "D3 for the Impatient"
pbashyal-nmdp/developer-resources
neo4j developer resources
pbashyal-nmdp/docker-hail
Dockerized Hail with examples for local install
pbashyal-nmdp/dotfiles
Dot Files
pbashyal-nmdp/EMR-ec2-cost-calculator
This project is written in python. It calculates the EMR cluster cost by getting the spot and ondemand prices of the instances and adding up the emr charges.
pbashyal-nmdp/ghactions
ghactions
pbashyal-nmdp/github-workshop
GitHub Workshop, Biox Team
pbashyal-nmdp/graph-measures
Topological feature calculators infrastructure.
pbashyal-nmdp/grimm
GRIMM: Graph IMputation and Matching for HLA Genotypes
pbashyal-nmdp/hello-world
My First Github Repository
pbashyal-nmdp/hml-fhir-app
HML to FHIR Conversion Application
pbashyal-nmdp/IHIW_Management
Management application for IHIW
pbashyal-nmdp/liftoverGL
pbashyal-nmdp/ngs
Next generation sequencing (NGS/HTS) tools.
pbashyal-nmdp/nmdp-bioinformatics-blog
NMDP Bioinformatics Blog
pbashyal-nmdp/nmdp-spark-hml
Apache Spark support for HML
pbashyal-nmdp/pandas-code-clinic
Pandas Code Clinic
pbashyal-nmdp/pypop
Python for Population Genomics
pbashyal-nmdp/r-minimal
Minimal Docker images for R
pbashyal-nmdp/seq-ann
Python package for doing fast and accurate sequence annotation
pbashyal-nmdp/spacemacs
A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!