Pinned Repositories
alignment
Contains BLASR-derived alignment algorithm routines
blasr
BLASR: The PacBio® long read aligner
blasr_libcpp
DALIGNER
Find all significant local alignments between reads
DAZZ_DB
The Dazzler Data Base
DConvert
DEXTRACTOR
Version 1.0
FALCON
FALCON: experimental PacBio diploid assembler
pbutgcns
DAG-based consensus caller for celera assemblers unitigs
pbjd's Repositories
pbjd/pbutgcns
DAG-based consensus caller for celera assemblers unitigs
pbjd/alignment
Contains BLASR-derived alignment algorithm routines
pbjd/blasr
BLASR: The PacBio® long read aligner
pbjd/blasr_libcpp
pbjd/DALIGNER
Find all significant local alignments between reads
pbjd/DAZZ_DB
The Dazzler Data Base
pbjd/DConvert
pbjd/DEXTRACTOR
Version 1.0
pbjd/FALCON
FALCON: experimental PacBio diploid assembler
pbjd/FindingFrequentWords
pbjd/img
Image file repo
pbjd/PacBioFileFormats
Specifications for PacBio® native file formats
pbjd/pb-correction-workflow
Composition of all the tools necessary to run a PacBio correction workflow
pbjd/pbalign
pbalign maps PacBio reads to reference sequences and saves alignments to a SAM or cmp.h5 file.
pbjd/pbbioconda
PacBio Secondary Analysis Tools on Bioconda
pbjd/pbdagcon
A sequence consensus algorithm implementation based on using directed acyclic graphs to encode multiple sequence alignment
pbjd/pbdata
Houses relevant datastructures derived from BLASR refactor
pbjd/pblibblasr
Refactored blasr core common into a library
pbjd/pi
Pacbio Integration -- a consistent contour of submodule commits for all GitHub repos that we use internally
pbjd/read-overlapper
Fast, simple model for overlapping PBI reads using a kmer-based approach
pbjd/refactored_blasr
pbjd/smrtmake
Hackable smrtpipe workflows using makefiles instead of smrtpipe.py
pbjd/yaar
Web-based alignment viewer, just for fun