pblaney
Senior Bioinformatics Programmer, Ph.D. Student in Computational Biology & Bioinformatics
NYU Langone Health
Pinned Repositories
battenberg
Battenberg R package for subclonal copynumber estimation
devgru
Developmental environment for GenomicRanges utilities
dryclean
Irons out wrinkles in noisy coverage data using robust PCA
gChain
R class for representing composable syntenic mappings between coordinates of 'omes and allowing nimble lift-over of genomic features and signals through these mappings within a GenomicRanges based framework.
Leukemia-36-2022
Repository for analysis in "Improving prognostic assignment in older adults with multiple myeloma using acquired genetic features, clonal hemopoiesis and telomere length." from Boyle, E.M., Williams, L., Blaney, P. et al.
mgp1000
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
mgp1000-docs
Docs for the MGP1000
mmsig
A method for fitting a known mutational signature reference to mutational catalogues from cancer samples
pcawgAdditiveVariance
Additive variance of non-coding passengers in Multiple Myeloma
readsupport
Computes read support for arbitrary junctions and contigs for single, paired-end, and linked reads
pblaney's Repositories
pblaney/mgp1000
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
pblaney/devgru
Developmental environment for GenomicRanges utilities
pblaney/battenberg
Battenberg R package for subclonal copynumber estimation
pblaney/dryclean
Irons out wrinkles in noisy coverage data using robust PCA
pblaney/gChain
R class for representing composable syntenic mappings between coordinates of 'omes and allowing nimble lift-over of genomic features and signals through these mappings within a GenomicRanges based framework.
pblaney/Leukemia-36-2022
Repository for analysis in "Improving prognostic assignment in older adults with multiple myeloma using acquired genetic features, clonal hemopoiesis and telomere length." from Boyle, E.M., Williams, L., Blaney, P. et al.
pblaney/mgp1000-docs
Docs for the MGP1000
pblaney/mmsig
A method for fitting a known mutational signature reference to mutational catalogues from cancer samples
pblaney/pcawgAdditiveVariance
Additive variance of non-coding passengers in Multiple Myeloma
pblaney/readsupport
Computes read support for arbitrary junctions and contigs for single, paired-end, and linked reads
pblaney/RSeqLib
R interface to SeqLib
pblaney/scXploringTheNiche
Single-cell eXploring the Bone Marrow Niche
pblaney/subscriptr
SLURM Scripts for BigPurple