pblischak

Computational Genetics/Genomics :: Bioinformatics :: Data Science

Bayer Crop ScienceGainesville, FL

Pinned Repositories

approximate_bayes
A worked example of approximate Bayesian computation in R
2 1 03
boost-docker-test
Test program for compiling/linking with the Boost C++ Libraries to create a Docker image
Language:C++9 1 04
HyDe
Hybridization detection using phylogenetic invariants
Language:Python41 2 4214
hyde-cnn
Hybridization Detection with Convolutional Neural Networks
Language:Python9 0 01
inbreeding-sfs
SFS-Based Demographic Inference with Inbreeding
Language:Forth1 1 00
polyfreqs
polyfreqs: an R package for Bayesian population genomics in autopolyploids
Language:R1 1 01
polyploid-demography
Demographic Inference in Polyploids
Language:Python5 2 00
polyploid-genotyping
SNP genotyping in polyploids
Language:C++15 1 33
QCF
Quartet concordance factor estimation
Language:C++3 1 10
zprob
A Zig Module for Random Number Distributions
Language:Zig7 1 101

pblischak's Repositories

pblischak/HyDe
Hybridization detection using phylogenetic invariants
Language:Python41 2 4214
pblischak/polyploid-genotyping
SNP genotyping in polyploids
Language:C++15 1 33
pblischak/boost-docker-test
Test program for compiling/linking with the Boost C++ Libraries to create a Docker image
Language:C++9 1 04
pblischak/hyde-cnn
Hybridization Detection with Convolutional Neural Networks
Language:Python9 0 01
pblischak/zprob
A Zig Module for Random Number Distributions
Language:Zig7 1 101
pblischak/polyploid-demography
Demographic Inference in Polyploids
Language:Python5 2 00
pblischak/QCF
Quartet concordance factor estimation
Language:C++3 1 10
pblischak/approximate_bayes
A worked example of approximate Bayesian computation in R
2 1 03
pblischak/inbreeding-sfs
SFS-Based Demographic Inference with Inbreeding
Language:Forth1 1 00
pblischak/polyfreqs
polyfreqs: an R package for Bayesian population genomics in autopolyploids
Language:R1 1 01
pblischak/Bann_spdelim
Python scripts for processing B. annulata ddRADseq data
Language:Python0 1 00
pblischak/pretty-pileup
Pretty Printing for SAMtools Pileups
Language:Rust0 1 20
pblischak/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0
pblischak/dotfiles
My dotfiles
Language:Lua1 0
pblischak/evol2017
Tutorial, code, and data for Evolution 2017
Language:Jupyter Notebook1 0
pblischak/evolution2016
Evolution 2016 Presentation (Austin, TX)
Language:TeX1 0
pblischak/fluidigm2purc
Automated processing and haplotype inference for double-barcoded PCR amplicons
Language:Python3 1
pblischak/fluidigm2purc-docker
Docker image for automated build of fluidigm2purc image
Language:Dockerfile1 0
pblischak/GMpi
A growth chamber sensing system using the Raspberry Pi as a platform
Language:Python1 0
pblischak/HyDe-Docker
Docker image for automated build of HyDe
Language:Dockerfile1 0
pblischak/hyde_cpp
Legacy version of HyDe in C++
Language:C++1 0
pblischak/pblischak.github.io
Research website
Language:HTML1 0
pblischak/PhyloNetworks.jl
A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
Language:Julia1 0
pblischak/ppgtk
the polyploid pop-gen toolkit
Language:C++1 0
pblischak/ppgtk-docker
Dockerfile for PPGtk
1 0
pblischak/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Language:Rust0 0
pblischak/Seq-Gen
Sequence simulator
Language:C1 0
pblischak/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python1 0
pblischak/trim_Nds
Trim N's and ?'s from the ends of nucleotide sequences
Language:R1 0
pblischak/zig-ndarray
N-Dimensional Arrays in Zig
Language:Zig