pbousquets
Currently doing my PhD at @xa-lab in University of Oviedo. Genomics and transcriptomics. Somatic mutations, splicing and differential expression.
University of OviedoXA-lab
Pinned Repositories
armadillo
A tool for detection of somatic mutations in repetitive regions
armadillo-batchx
armadillo-dataprep-batchx
beast-mcmc-flipflop
bsqts
Biscuits - A package of helper functions for R
phyfum
pbousquets's Repositories
pbousquets/beast-mcmc-flipflop
pbousquets/armadillo
A tool for detection of somatic mutations in repetitive regions
pbousquets/armadillo-batchx
pbousquets/armadillo-dataprep-batchx
pbousquets/bsqts
Biscuits - A package of helper functions for R
pbousquets/phyfum
pbousquets/CNAqc
CNAqc - Copy Number Alteration (CNA) Quality Check package
pbousquets/cookiecutter_apps
Cookiecutter template for Isabl apps
pbousquets/copynumber
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/copynumber.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=copynumber.
pbousquets/genomics-analysis-pipelines
Pipeline codes for analyzing various genomics datasets based on MACS3
pbousquets/gpl-wrapper
A wrapper for GPL-nf pipeline
pbousquets/gridss-purple-linx-nf
Nextflow pipeline and AWS stack for the GRIDSS/PURPLE/LINX toolkit
pbousquets/IgCaller
Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in lymphoid neoplasms.
pbousquets/RFcaller
A pipeline that uses read-level features and extra trees/random forest algorithms for accurate and fast detection of somatic mutations in next generation sequencing data
pbousquets/sequenza
pbousquets/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
pbousquets/THetA
Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This repository includes the updated algorithm, called THetA2.