pbs-assess/sdmTMB

Issues

• Add section to multispecies/group vignette about multiple spatial + spatiotemporal fields

  #392 opened 21 days ago by seananderson
  0

• EDF and cAIC

  #383 opened 2 months ago by James-Thorson-NOAA
  7

• get_index potential computation issues for very large prediction grids

  #334 opened a month ago by Lewis-Barnett-NOAA
  12

• `est` from `predict(type = "link")` with Poisson-link delta models

  #389 opened a month ago by maxlindmark
  1

• Create setting to fit models with 0 or 100% encounters in any given year

  #386 opened a month ago by Lewis-Barnett-NOAA
  7

• Write a vignette demonstrating a simulation-based power analysis

  #384 opened 2 months ago by seananderson
  0

• Allow `predict(..., newdata = ..., re_form_iid = NA)` with missing random intercept column

  #382 opened 2 months ago by seananderson
  0

• get_index not working with bias_correct = TRUE

  #380 opened 2 months ago by chat29
  4

• Error in `check_time_class()`

  #377 opened 3 months ago by javierlenzi
  1

• Add time-varying AR1 correlation parameter to print and tidy output

  #374 opened 3 months ago by seananderson
  0

• Add tidy to sdmTMB_cv

  #319 opened 10 months ago by ericward-noaa
  1

• Add cli progress bars where appropriate

  #346 opened 4 months ago by seananderson
  1

• Fix coef() to work with delta models

  #351 opened 4 months ago by ericward-noaa
  1

• NA/NaN gradient evaluation issue encountered when running the sdmTMB using Beta family

  #364 opened 4 months ago by xiacong2019
  4

• make_mesh cryptic fail when NA in coordinates

  #365 opened 4 months ago by lionel-ign
  2

• Error in applying visreg to fitted model

  #366 opened 4 months ago by mdmazur
  4

• Cross validation function does not seem to consider offset in model

  #372 opened 4 months ago by marchtaylor
  4

• Using sdmTMB in parallel

  #368 opened 4 months ago by fhui28
  2

• sdmTMB_simulate issue for very coarse mesh

  #370 opened 4 months ago by fhui28
  4

• Problem in SVC vignette

  #363 opened 4 months ago by joshcullen
  6

• Add effective area occupied calculations in .cpp

  #348 opened 7 months ago by seananderson
  1

• Predictions for `truncated_nbinom2` models

  #350 opened 7 months ago by tom-peatman
  10

• tidy with exponentiate = TRUE returns CIs based on already exponentiated estimate

  #353 opened 7 months ago by maxlindmark
  1

• Allow the 'area' argument to take a column name

  #347 opened 7 months ago by seananderson
  0

• Drop the 'proj' section of the .cpp template

  #345 opened 7 months ago by seananderson
  0

• NA/NaN gradient evaluation error encountered when running sdmTMB function with spatial `on`

  #288 opened a year ago by davjfish
  22

• Release sdmTMB 0.6.0

  #343 opened 7 months ago by seananderson
  0

• Predictions with new data from delta models with random intercepts

  #342 opened 8 months ago by tom-peatman
  3

• Expanding abundance when fitting Bernoulli-cloglog model

  #339 opened 8 months ago by James-Thorson-NOAA
  2

• get_index() over alternate time variable?

  #338 opened 8 months ago by seanhardison1
  3

• Add names of random effects in tidy()

  #337 opened 9 months ago by seananderson
  1

• Simplify extra time implementation

  #329 opened 9 months ago by seananderson
  0

• Fix prediction with newdata = NULL for non-delta models with extra_time

  #335 opened 9 months ago by seananderson
  0

• Release sdmTMB 0.5.0

  #325 opened 9 months ago by seananderson
  1

• Add check in predict() that spatial coordinates are within the fitted coordinates

  #285 opened 9 months ago by seananderson
  0

• Computational scaling with large datasets, especially for Tweedie

  #302 opened 9 months ago by seananderson
  0

• Release sdmTMB 0.4.3

  #303 opened 10 months ago by seananderson
  6

• Make get_index() smarter about extra time slices and area argument

  #323 opened 9 months ago by seananderson
  2

• Add `type` argument to delta families

  #290 opened 9 months ago by seananderson
  2

• `mvn-laplace` residual estimation fails due to `predict.sdmTMB()` offset issue

  #326 opened 10 months ago by sebpardo
  0

• Add RMSE and MAE sdmTMB_cv examples to cross validation vignette

  #322 opened 10 months ago by seanhardison1
  3

• Rename time column internally to protect against extra_time + as.factor conflict

  #320 opened 10 months ago by Lewis-Barnett-NOAA
  2

• Add argument to _mix() families for fixed proportion?

  #318 opened 10 months ago by seananderson
  1

• Update Bayesian vignette to note Jacobian adjustments and how to enable those

  #316 opened 10 months ago by seananderson
  0

• Adding `getsd = TRUE` to `sdmTMBcontrol`

  #311 opened 10 months ago by James-Thorson-NOAA
  2

• poisson-link does not confer correct combination of link functions

  #308 opened 10 months ago by Lewis-Barnett-NOAA
  1

• MCMC samples don't work with `extra_time`

  #297 opened a year ago by ericward-noaa
  1

• Push an update to CRAN to force binary rebuilds

  #287 opened a year ago by seananderson
  1

• Release sdmTMB 0.4.2

  #289 opened a year ago by seananderson
  1

• `predict()` for a model with spatially varying coefficients requires `newdata`

  #279 opened a year ago by ecophilina
  3