Pinned Repositories
americangut
American Gut Project data processing
aPTR
Microbial dynamics inferred from single-sample amplicon sequencing
BIOL3308_lectures
Lectures for Barnard College BIOL3308 class
datamining
Microbial abundance data mining and metadata curation
gda_project
Geometric data analysis (COMS 4995) final project
hyperdt
Hyperbolic decision trees
manifolds
Profiling manifolds in metagenomic data
misdeed
Microbiome data simulator for power analysis
phylosig
Phylogenetic signal (Pagel's lambda) and its relationship to metric curvature
xgboost_forecasting
Use XGBoost for multivariate time series forecasting with irregular data
pchlenski's Repositories
pchlenski/hyperdt
Hyperbolic decision trees
pchlenski/misdeed
Microbiome data simulator for power analysis
pchlenski/aPTR
Microbial dynamics inferred from single-sample amplicon sequencing
pchlenski/americangut
American Gut Project data processing
pchlenski/gda_project
Geometric data analysis (COMS 4995) final project
pchlenski/manifolds
Profiling manifolds in metagenomic data
pchlenski/phylosig
Phylogenetic signal (Pagel's lambda) and its relationship to metric curvature
pchlenski/xgboost_forecasting
Use XGBoost for multivariate time series forecasting with irregular data
pchlenski/BIOL3308_lectures
Lectures for Barnard College BIOL3308 class
pchlenski/datamining
Microbial abundance data mining and metadata curation
pchlenski/e4040-2021Fall-Project-BIOM-rr3415-pc2946-hs3164
Neural distance embeddings project
pchlenski/eprime
Translation of the predicative copula using vector methods
pchlenski/grand_tour
Visualize high-dimensional data by low-dimensional animations
pchlenski/microbial_genomics_labs
Labs for BIOL BC3300 Microbial Genomics (2023)
pchlenski/mixture
Mixture embeddings for microbiome data
pchlenski/NeuroSEED
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
pchlenski/embedders
Generate graph/data embeddings multiple ways
pchlenski/gpt_translate
Generate line-by-line translations using GPT API
pchlenski/mats
SERI MATS research sprint
pchlenski/mats-app
SERI MATS application research
pchlenski/mixture_embeddings
Mixture embeddings for microbiome data
pchlenski/mlp_linearization
pchlenski/p3_docs
This repository is for manage PATRIC static contents such as Website Tutorial, CLI Tutorial, User Guides, and PATRIC eNews.
pchlenski/phyleak
Phylogenetic leakage: non-independence of sequence embeddings
pchlenski/rast-predictors
Predictors to facilitate automated RAST genome submission
pchlenski/synthtree
Testing synthetic data methods for phylogenetic trees + sequences
pchlenski/Tensor-Puzzles
pchlenski/transformer
pchlenski/treemean
Find a consensus node given a tree and counts at leaves
pchlenski/what_are_embeddings
A deep dive into embeddings starting from fundamentals