Incorrect variant position in annotation
p-polacek opened this issue · 0 comments
p-polacek commented
Describe the bug
Hi, I noticed a few cases in my data that the annotation for a variant by snpEff gets a wrong position in the HGVS.p field. In the example below, the variant is a D to A change at protein position 158, but gets annotated as D157A.
To Reproduce
- SnpEff version: 5.1d (build 2022-04-19 15:49)
- Genome version: C. annuum 1.6
- SnpEff full command line: SnpEff snpeff_err data/snpeff_err/error.vcf