pcingola/SnpEff

Issues

• HGVS - variant not annotated with 3' rule

  #562 opened 19 days ago by Suzie-D
  0

• Blobs don't exist

  #561 opened 21 days ago by Posmani
  0

• a bug of HGVS nomenclature(protein level)

  #560 opened a month ago by xiechangxiao
  0

• Three different annotations for one transcript in one variant

  #559 opened a month ago by pogodina-nadezda
  0

• Can't download GRCh38.99 database

  #558 opened a month ago by sunrain1234
  0

• I am having problems with the snpEff during the build running process

  #534 opened 5 months ago by hosseinidf
  1

• Not annotating <INS> alts

  #557 opened a month ago by jodyphelan
  0

• No CDS checked.

  #556 opened a month ago by oYZYo
  1

• mm39 database download issue

  #536 opened 5 months ago by arundurvasula
  6

• removing database

  #555 opened a month ago by lagoonas
  0

• Download specific version of SnpEff/SNPSift

  #554 opened 2 months ago by kmavrommatis
  0

• Commands to Generate Summary Statistics in summary.html

  #553 opened 2 months ago by assia-hub
  0

• version of HGVS nomenclature

  #551 opened 3 months ago by niulili
  0

• SnpSift Filter issue

  #550 opened 3 months ago by Am3LieC
  0

• Number variants by type error

  #549 opened 3 months ago by fan040
  0

• Issue with snpEff annotation - Process

  #546 opened 3 months ago by aswani1208
  1

• Candida_auris database is not available

  #547 opened 3 months ago by davidhoover
  0

• False flag frameshift variant prediction ?

  #542 opened 4 months ago by pelotbdr
  0

• No protein coding transcript has UTR

  #539 opened 4 months ago by Amatatsu15
  1

• Call home server "dnaminer.com" is no longer registered

  #541 opened 4 months ago by rpetit3
  1

• Incorrect variant position in annotation

  #538 opened 5 months ago by p-polacek
  0

• Problem getting snfEff running

  #535 opened 5 months ago by Petra0711
  0

• .genome not found

  #514 opened 5 months ago by C37H41N2O6
  5

• HGVS Nomenclature issues

  #532 opened 5 months ago by RaquelRomeroF
  0

• Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis

  #533 opened 5 months ago by elizakirsch0
  0

• Incorrect classification duplication variant as intron coding?

  #531 opened 5 months ago by kzaslavsky
  1

• Mutithreading mode is broken: Move to Java streams + lambdas

  #530 opened 6 months ago by johnatansiani
  0

• Does the absence of a gene in the results mean that it has no variation in the populations?

  #529 opened 6 months ago by Galaxy-228
  0

• Problem with downlading genome

  #526 opened 6 months ago by javierAPC
  0

• Error: Unknown option '-noCheckCds'

  #528 opened 6 months ago by tania-k
  0

• Is it possible to merge several vcf/csvs and htmls (splitting large vcf by chromosome)

  #525 opened 6 months ago by KewinOgink
  0

• WISH: Version-specific download links

  #524 opened 6 months ago by HenrikBengtsson
  0

• Make building and using a custom database easier.

  #523 opened 6 months ago by J-Moravec
  0

• Database request: raccoon (Procyon lotor)

  #522 opened 7 months ago by Joannakolodz
  0

• snpeff.config: Split into config, database of genomes/sources and codon table

  #521 opened 7 months ago by J-Moravec
  0

• Inconsistent return of ERROR_OUT_OF_CHROMOSOME_RANGE

  #520 opened 7 months ago by danieljrichard
  0

• problems with building database for CriGri1.0

  #519 opened 7 months ago by gabrielet
  0

• Problems with building database: WARNING_EXON_NOT_FOUND

  #518 opened 7 months ago by sarahveronica
  0

• Different output when using -FileList

  #517 opened 7 months ago by pcoenen
  0

• BND with chr in the ALT alleles are converted to upper case

  #516 opened 7 months ago by RenzoTale88
  0

• Discrepancy of count for intron_variant effect and INTRON region

  #515 opened 8 months ago by maggs-x
  0

• Latest v5.2b not correctly displayed nor linked on SnpEff's website

  #513 opened 8 months ago by jamigo
  0

• i was working on Variant Annotation ...the error was genes.gff not found

  #511 opened 9 months ago by singha30
  2

• Security Vulnerability

  #512 opened 9 months ago by mohitmathew
  0

• Another snpEff regression between versions 5.0 and 5.1/5.2

  #510 opened 9 months ago by tillea
  2

• Why bacteria genome has predicted intron/exon regions?

  #506 opened 10 months ago by elifozcelik
  2

• Variant Calling Analysis for Oryza sativa Indica Group Genes (ASM465v1) and Clarification on Annotated Variant Files

  #509 opened 10 months ago by mathavanpu
  1

• Annotate with multiple databases

  #507 opened 10 months ago by anpego3
  1

• ERROR 409: Public access is not permitted on this storage account..

  #505 opened a year ago by RohitKapila
  2

• ERROR 409 : Public access is not permitted for downloading binary or databases

  #503 opened a year ago by DanielKwon
  13