Pinned Repositories
angsbigd
angsd reanalysis of maize HM3 data
angsd-wrapper
A project for extending ANGSD
at-scripts
Helper scripts for dealing with various file conversions etc.
coverage-depth-assembly
Experiement looking at how widely different coverage affects viral assemblies
FPS-repository
A place for hopefully well documented scripts related to assembly, blast, and others
frydomics
A journal club for -omicsy things @ UCLA
GDB-sim
A shiny application that simulates plant disease spread on a 25x25 grid
Maize-Background-Selection-Simulations
A pipeline for both forward and coalescent simulations of background selection during maize domestication on Slurm
arundurvasula's Repositories
arundurvasula/angsd-wrapper
A project for extending ANGSD
arundurvasula/frydomics
A journal club for -omicsy things @ UCLA
arundurvasula/angsbigd
angsd reanalysis of maize HM3 data
arundurvasula/coverage-depth-assembly
Experiement looking at how widely different coverage affects viral assemblies
arundurvasula/GDB-sim
A shiny application that simulates plant disease spread on a 25x25 grid
arundurvasula/at-scripts
Helper scripts for dealing with various file conversions etc.
arundurvasula/FPS-repository
A place for hopefully well documented scripts related to assembly, blast, and others
arundurvasula/Maize-Background-Selection-Simulations
A pipeline for both forward and coalescent simulations of background selection during maize domestication on Slurm
arundurvasula/angsd-wrapper-paper
Manuscript!
arundurvasula/archie2
better
arundurvasula/arundurvasula.github.io
arundurvasula/assembler-compare-old
A script to compare assemblers using metrics from the Assemblathon papers
arundurvasula/assembler_compare
arundurvasula/aw-mer
arundurvasula/CV
Curriculum Vitae
arundurvasula/Dom_Bot
Parameterize the maize domestication bottleneck
arundurvasula/domestication_sims
A simulation pipeline for maize domestication
arundurvasula/dominance
arundurvasula/fps-cluster-guide
A guide to using the Farm cluster for Foundation Plant Services
arundurvasula/fwdpp
fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations
arundurvasula/gal_bal
arundurvasula/GRFP
Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecology and Evolutionary Biology.
arundurvasula/gwas_rmd
arundurvasula/libsequence
libsequence: a C++ class library for evolutionary genetic analysis
arundurvasula/logthat
A program that remembers what you did to your data so you don't have to
arundurvasula/migration
arundurvasula/missense
arundurvasula/reovirus-NGS-analysis
arundurvasula/shiny-distributions
An R-shiny application to plot distributions and play around with parameters
arundurvasula/stdpopsim
A library of standard population genetic models