/umi_rx

Add RX tag to BAM file, from UMI read name

Primary LanguageJava

umi_rx

Add UMI tag to RX tag in a BAM file, also add 'MQ' tag

Install

Prerequisites

  • Java 12

Compile

Run script/make.sh The JAR file is created at target/umi_rx-0.1-jar-with-dependencies.jar

Running

java -Xmx2G UmiRx.jar in.bam out.bam

You can use '-' for STDIN / STDOUT (in.bam or out.bam respectively)