Pinned Repositories
cheatsheets
Various cheatsheets for python/R packages I use
chipseq_misc
Miscellaneous scripts for ChIP-seq analysis
DECoN
example_docker_django_app
Example docker with django, nginx, mysql, redis, celery
GeL2MDT
Repository for GeL2MDT, management software for 100KGP patient results and MDTs.
GelReportModels
gemini
a lightweight db framework for exploring genetic variation.
igv-reports
Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
pyatactools
Pipeline for ATAC-seq analysis
pdl30's Repositories
pdl30/GeL2MDT
Repository for GeL2MDT, management software for 100KGP patient results and MDTs.
pdl30/pyatactools
Pipeline for ATAC-seq analysis
pdl30/cheatsheets
Various cheatsheets for python/R packages I use
pdl30/chipseq_misc
Miscellaneous scripts for ChIP-seq analysis
pdl30/DECoN
pdl30/example_docker_django_app
Example docker with django, nginx, mysql, redis, celery
pdl30/GelReportModels
pdl30/gemini
a lightweight db framework for exploring genetic variation.
pdl30/igv-reports
Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
pdl30/ngs_metrics_app
Django app which plots metrics of NGS samples
pdl30/pychiptools
Pipeline for ChIP-seq analysis
pdl30/PyGProfile
PyGProfile is a Python module to profile gene lists using Gene Ontology, Pathways and phenotypic annotation
pdl30/pyngspipe
Automated pipeline for processing RNA-seq and ChIP-seq samples from GEO
pdl30/pyngsplot
Plotting transcription and peak regions for ChiP-seq and RNA-seq data
pdl30/pynoncode
A pipeline for the analysis of Non-coding RNA profiling by high throughput sequencing
pdl30/pyribotools
Python package for analysing Riboseq data
pdl30/pyrnatools
Pipeline for RNA-seq analysis
pdl30/python_snippets
Collection of useful python scripts
pdl30/rnaseq_misc
Miscellaneous scripts for RNA-seq analysis
pdl30/zippy
Zippy - Batch primer design tool and database