Pinned Repositories
autoencoded-vocal-analysis
Modeling animal vocalizations with variational autoencoders
Bubblewrap
ecogtools
functions for ecog data analysis
efficientcoding
gbds
Goal-Based Dynamical System for behavioral data analysis
pearsonlab.github.io
Lab webpage
pupil
Matlab and Python code for pupillometry studies.
pygonogo
Python version of go/no-go task
spiketopics
Topic modeling for neural populations
tobii_glasses2_utils
Various utilities to record and process Tobii Glasses 2 eye-tracking data
Pearson Lab at Duke University's Repositories
pearsonlab/autoencoded-vocal-analysis
Modeling animal vocalizations with variational autoencoders
pearsonlab/pearsonlab.github.io
Lab webpage
pearsonlab/pupil
Matlab and Python code for pupillometry studies.
pearsonlab/Bubblewrap
pearsonlab/BinaryStim
Repo for code and figures associated with the paper 'Online Neural Connectivity Estimation with Noisy Group Testing'
pearsonlab/efficientcoding
pearsonlab/gbds
Goal-Based Dynamical System for behavioral data analysis
pearsonlab/legal
Analysis models for Duke Legal Decision Making Survey
pearsonlab/proSVD
pearsonlab/spiketopics
Topic modeling for neural populations
pearsonlab/finch-vae
Joint-encoding VAE for zebra finch song and neural data
pearsonlab/anti-bayes
Modeling of non-Bayesian psychometric behavior in a jump detection task
pearsonlab/artificial-agents-social-decisions
John's talk at Duke's Basic Science Day 2018
pearsonlab/beyond-tuning-curve
John's talk "Systems neuroscience beyond the tuning curve"
pearsonlab/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
pearsonlab/concrete
continuous relaxation of HMM
pearsonlab/dibs-zebrafish-incubator
pearsonlab/edf_data_processing
Python scripts for initial data processing of edf files on back-end server
pearsonlab/efficientcodingcolor
Color project (David St-Amand)
pearsonlab/imagemp
Concurrent image acquisition and processing (producer-consumers model), with maximized efficiency and minimized chance of missing a frame
pearsonlab/modeling-differential-games
John's talk: "Modeling real behavior in two-person differential games"
pearsonlab/penaltyshot_task
pearsonlab/POISE-VAE-JAX
Experimental implementation of POISE-VAE in JAX
pearsonlab/sfn-2019
John's talk at the 2019 Society for Neuroscience meeting
pearsonlab/SpikingNeuralNets.jl
A Julia library for simulating arbitray populations of spiking neurons.
pearsonlab/stitch
Server for piping zebrafish images through CaImAn
pearsonlab/stoblodetnet
pearsonlab/syrinx
Code for modeling song generation in the avian vocal periphery
pearsonlab/tf_gbds
TensorFlow implementation of goal-based dynamical system model
pearsonlab/VAE-GAM-
Code for VAE-GAM fMRI model