Pinned Repositories
SCATrEx
Map single-cell transcriptomes to copy number evolutionary trees.
scDEF
Deep exponential families for single-cell data.
SCICoNE
Single-cell copy number calling and event history reconstruction.
rnn-forecaster-plugin
A plugin for Pentaho's Kettle which allows users to make data forecasts based on Recurrent Neural Network models trained on Weka using the wekaDeeplearning4j package. Code based on the Weka Scoring plugin by Mark Hall.
scrnaseq_benchmarking
Package to reproduce results in my MSc Thesis.
timeSeriesForecasting
Weka's Time Series Forecasting package by Mark Hall.
tumorevo
Simulate and illustrate tumor evolution.
wekaDeeplearning4j
Weka DL4J. Original code by Mark Hall
zinbayes
A Bayesian model for scRNA-seq data.
pedrofale's Repositories
pedrofale/tumorevo
Simulate and illustrate tumor evolution.
pedrofale/zinbayes
A Bayesian model for scRNA-seq data.
pedrofale/rnn-forecaster-plugin
A plugin for Pentaho's Kettle which allows users to make data forecasts based on Recurrent Neural Network models trained on Weka using the wekaDeeplearning4j package. Code based on the Weka Scoring plugin by Mark Hall.
pedrofale/scrnaseq_benchmarking
Package to reproduce results in my MSc Thesis.
pedrofale/timeSeriesForecasting
Weka's Time Series Forecasting package by Mark Hall.
pedrofale/mpCMF
Package for a generative model for scRNA-seq data.
pedrofale/simple-PCA
A script to test PCA on simple problems
pedrofale/Thesis-Code
Scripts to test models relevant to my MSc Thesis on Machine Learning for Genomic Medicine
pedrofale/Diane
A personal assistant in my bedroom.
pedrofale/learning-git
Repo to learn how to git
pedrofale/RCI-Reliable-Message-Board
Project for the Computer Networks course at IST, Lisbon during the summer semester of 2016/17.
pedrofale/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
pedrofale/scVI
A deep generative model for gene expression profiles from single-cell RNA sequencing
pedrofale/Spoon-Knife
This repo is for demonstration purposes only.
pedrofale/wekaDeeplearning4j
Weka DL4J. Original code by Mark Hall
pedrofale/AutoML_Benchmark
Benchmarking auto-ML frameworks.
pedrofale/cytodata-hackathon-base
pedrofale/noc-examples-p5.js
Port to p5.js of Nature of Code examples
pedrofale/pangolin
BSSE COVID-19 sequencing of test swab samples
pedrofale/pedrofale.github.io
pedrofale/ridge_map
Ridge plots of ridges
pedrofale/vbpi-nf
Code for improved variational Bayesian phylogenetic inference with normalizing flows