perishky/meffil

Issues

• Issue with meffil.ewas model

  #60 opened a month ago
  0

• usage of cell type output

  #59 opened 4 months ago
  0

• add new saliva reference

  #58 opened 5 months ago
  0

• Issue in meffil:::guess.featureset

  #57 opened 6 months ago
  5

• meffil.qc.summary Error and Warning

  #56 opened 8 months ago
  4

• qc.summary warning about scale guides

  #55 opened 8 months ago
  1

• warning message from meffil.ewas.summary()

  #54 opened a year ago
  0

• ewas.parameters <- meffil.ewas.parameters(sig.threshold=1e-20, max.plots=5)

  #53 opened a year ago
  0

• meffil.normalize.dataset() threw me an error

  #52 opened a year ago
  4

• Normalization function creates many NAs

  #51 opened a year ago
  4

• 450k, epicv1, and epicv2

  #50 opened a year ago
  0

• meffil.normalize.samples function needs raw values

  #49 opened a year ago
  2

• EPIC v2 multiple `IlmnID` per CpG `Name` behavior

  #48 opened a year ago
  5

• meffil.ewas.summary with GDS

  #47 opened 2 years ago
  2

• Creating chunks for parallelization using `meffil.normalize.samples()` error

  #45 opened 2 years ago
  2

• Checks for sample swap detection

  #44 opened 2 years ago
  1

• DMPs vs DMRs

  #43 opened 2 years ago
  1

• ewas / champ output comparison

  #42 opened 2 years ago
  1

• Guidance on plink step in QC

  #41 opened 2 years ago
  2

• Length > 1 error on R 4.2

  #40 opened 2 years ago
  4

• qc.objects - annotation

  #39 opened 2 years ago
  2

• add new cell type reference

  #38 opened 2 years ago
  1

• meffil.ewas.summary coerce error

  #37 opened 3 years ago
  0

• Start with methlyation level table

  #36 opened 3 years ago
  3

• Testing more than one phenotype

  #35 opened 3 years ago
  0

• Cell composition

  #34 opened 3 years ago
  1

• dimnames error in meffil.normalize.samples()

  #33 opened 3 years ago
  5

• Report variance of normalized betas principal components

  #32 opened 3 years ago
  5

• Normalize a subset of samples

  #31 opened 4 years ago
  2

• Figure sub-folder in the EWAS report

  #30 opened 4 years ago
  1

• Downloading of normalized Methylation values in simple .txt format

  #29 opened 4 years ago
  4

• Extracting genotypes from Methylation data

  #28 opened 4 years ago
  3

• How to make sure meffil matches the newly added EPIC b5 manifest

  #27 opened 4 years ago
  1

• Problem generating normalized beta value for EPIC array data

  #26 opened 4 years ago
  3

• normalized control probe values

  #25 opened 4 years ago
  1

• Possible to include all minfi's cell type references in the meffil.estimate.cell.counts.from.betas function?

  #24 opened 4 years ago
  3

• genotype check related samples

  #23 opened 3 years ago
  0

• mysterious error trying to estimate cell counts from betas - please help?

  #22 opened 5 years ago
  0

• Meffil - coding of unknown phenotypes

  #20 opened 5 years ago
  0

• 27k Support

  #19 opened 4 years ago
  4

• new cell type reference

  #18 opened 5 years ago
  2

• load-epic-manifest

  #17 opened 4 years ago
  1

• Workflow validation

  #16 opened 5 years ago
  2

• Version conflicts with CopyNumber450k

  #15 opened 5 years ago
  4

• EWAS: Multiple testing correction

  #14 opened 5 years ago
  1

• EWAS: fixed vs random and multiple batch effects

  #13 opened 5 years ago
  1

• Import/Convert minfi objects?

  #12 opened 5 years ago
  2

• Negative estimated cell counts?

  #11 opened 6 years ago
  2

• Imputation Issue

  #10 opened 6 years ago
  7

• QC Reports

  #9 opened 6 years ago
  2