Pinned Repositories
bam2ssj
This utility is deprecated. SJCOUNT package shall be used instead.
bamflag
This utility marks the uniquely mapped reads in a bam file by updating the FLAG field (bit 0x800) or by updating the NH tag
hm-splice-pipe
human-mouse comparative splicing pipeline
ipsa
This is IPSA package light version
ipsa-full
Integrative Pipeline for Splicing Analyses (IPSA)
irbis
A package for ultrafast detection of conserved complementary n-mers in a set of orthologous sequences
nmdnar
This is a repository of scripts for "Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay"
RIC-contacts
This package contains a pipeline for prediction of RNA-RNA contacts from RIC-seq data.
sjcount
sjcount light version
sjcount-full
Annotation-agnostic SJ counting pipeline
pervouchine's Repositories
pervouchine/bam2ssj
This utility is deprecated. SJCOUNT package shall be used instead.
pervouchine/sjcount-full
Annotation-agnostic SJ counting pipeline
pervouchine/sjcount
sjcount light version
pervouchine/ipsa
This is IPSA package light version
pervouchine/ipsa-full
Integrative Pipeline for Splicing Analyses (IPSA)
pervouchine/irbis
A package for ultrafast detection of conserved complementary n-mers in a set of orthologous sequences
pervouchine/nmdnar
This is a repository of scripts for "Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay"
pervouchine/npIDR
Non-parametric IDR estimation
pervouchine/RIC-contacts
This package contains a pipeline for prediction of RNA-RNA contacts from RIC-seq data.
pervouchine/bamflag
This utility marks the uniquely mapped reads in a bam file by updating the FLAG field (bit 0x800) or by updating the NH tag
pervouchine/hm-splice-pipe
human-mouse comparative splicing pipeline
pervouchine/maptools
This package contains lift-over and other alignment tools
pervouchine/nmd
This is a repository of scripts for "Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay"
pervouchine/nmdnew
nmd paper redone for site-centric metrics
pervouchine/preph.paper
Supplementary Data Files for PrePh paper
pervouchine/StrAnno
pervouchine/trackhubs
Track hubs for the Genome Browser