petersaj/AP_histology

Issues

• Python implementation?

  #34 opened 8 months ago by AngCamp
  3

• Missing functions?

  #33 opened 9 months ago by RobertodelaTorre
  2

• CCF alignment of brain regions without a full histology brain slice

  #32 opened 10 months ago by SaraMederos
  3

• Error displaying Neuropixels trajectory

  #31 opened a year ago by NJamann
  2

• Parent structures and white matter

  #28 opened a year ago by elladulko
  1

• Identifying probe trace when it is across multiple slices

  #26 opened a year ago by cspurandare
  1

• channel's cordiantes

  #25 opened a year ago by parviz-gh
  1

• Adapting the code for a different probe than Neuropixels

  #15 opened a year ago by elladulko
  3

• Transform and coordinates

  #7 opened a year ago by Antorithms
  22

• Can I map the multiple probes from multiple mice onto a single brain?

  #21 opened a year ago by Virginia9733
  3

• Identifying laminar boundaries and issue using AP_histology2ccf

  #27 opened a year ago by winnyning
  3

• Export aligned CCF as vector graphics file

  #19 opened a year ago by ckfaber
  1

• Understanding of probe trajectories in 3D fig

  #30 opened a year ago by Tan-Lao
  2

• Electrophysiology/histology alignment tool fix

  #29 opened a year ago by petersaj
  0

• The step of White-balance slides was not performed

  #24 opened 2 years ago by Tan-Lao
  3

• Is there a way to verify the cluster's anatomical location?

  #20 opened 2 years ago by elladulko
  4

• AP_loadStructureTree

  #23 opened 2 years ago by imontiel92
  2

• Transform the probe_ccf.trajectory_coords into the coordinates under res = 25um

  #22 opened 2 years ago by PathwayinGithub
  6

• AP_align_probe_histology

  #17 opened 2 years ago by Virginia9733
  11

• Is 'template_depths' reverse version of Kilosort ouput depths?

  #18 opened 2 years ago by geonung
  5

• Unrecognized function or variable 'natsortfiles'.

  #16 opened 2 years ago by Virginia9733
  14

• integrate deepslice

  #14 opened 2 years ago by chongtianyifa
  5

• Original Image to CCF aligned

  #8 opened 2 years ago by juliencarponcy
  4

• Using the function 'AP_align_probe_histology'

  #12 opened 2 years ago by Oryud
  8

• 4-shank probe track

  #10 opened 2 years ago by xcccc402
  1

• transform coordinates detect by ImagJ

  #13 opened 2 years ago by chongtianyifa
  5

• Slices thickness

  #11 opened 3 years ago by elladulko
  2

• Issue with Labeling 10+ probes in get_probe_histology

  #9 opened 3 years ago by kangelaa
  2

• Sagittal Slices

  #6 opened 3 years ago by Newtstein
  5

• Code error "Expected input number 2, ANGLE, to be real.

  #4 opened 3 years ago by AdaQianLI
  5

• Problem loading histology_ccf.mat

  #3 opened 3 years ago by spritefullake
  1

• smooth function not found

  #2 opened 4 years ago by HernandoMV
  2

• out of memory issue(zeros function for binned_spikes_depth)

  #1 opened 4 years ago by geonung
  4