pgrosjean
Bioinformatics PhD student @ UCSF. Working at the intersection of Deep Learning and Functional Genomics.
UCSF - BMISan Francisco, CA
Pinned Repositories
ggetrs
Efficient querying of biological databases
bmi_206_individual
This is the repository for my individual portion of the UCSF BMI 206 Project. This project focuses on chemotype enrichment and spectral characterization of essential reactions in reaction-centric metabolic networks.
BMI_Bootcamp2020
cellpose
a generalist algorithm for cellular segmentation
HE2RNA_code
Train a model to predict gene expression from histology slides.
ij1-patcher
Extension points for ImageJ 1.x via runtime patching to support (limited) headless operation and ImageJ2's legacy layer
imglib2-roi
Regions of interest (ROIs) and labelings for ImgLib2
pgrosjean.github.io
pyguide
wsi_ssl
This is a simple repository containing a single training script for fine-tuning DINO V2 with the DINO V1 loss for whole slide images in histopathology.
pgrosjean's Repositories
pgrosjean/pgrosjean.github.io
pgrosjean/pyguide
pgrosjean/bmi_206_individual
This is the repository for my individual portion of the UCSF BMI 206 Project. This project focuses on chemotype enrichment and spectral characterization of essential reactions in reaction-centric metabolic networks.
pgrosjean/BMI_Bootcamp2020
pgrosjean/cellpose
a generalist algorithm for cellular segmentation
pgrosjean/HE2RNA_code
Train a model to predict gene expression from histology slides.
pgrosjean/ij1-patcher
Extension points for ImageJ 1.x via runtime patching to support (limited) headless operation and ImageJ2's legacy layer
pgrosjean/imglib2-roi
Regions of interest (ROIs) and labelings for ImgLib2
pgrosjean/wsi_ssl
This is a simple repository containing a single training script for fine-tuning DINO V2 with the DINO V1 loss for whole slide images in histopathology.
pgrosjean/nuclei_find
This toolkit enables the detection of nuclei in low resolution images through the use of a novel computer vision workflow. Nuclei can also be clustered to given coordinates enabling the spatial quantification of cells.
pgrosjean/Project1
pgrosjean/Project2
pgrosjean/Project3