Clearly specify which tool output files needing used

Question

fmaguire opened this issue 4 years ago · 2 comments

Update documentation to clearly specify WHICH output file (and its name/naming scheme) the parsers are designed to work on for each tool.

Add same documentation to CLI for each relevant parser.

Answer 1 · 2020-09-25T18:27:40.000Z

The help information in the parser now provides a loose example of WHICH output file should be used for each tool: https://github.com/pha4ge/hAMRonization/blob/master/hAMRonization/__init__.py#L40

This still could do with being explicitly documented in the README.

Answer 2 · 2021-03-11T16:25:19.000Z

Added to the help messages and README.