data-harmonization
There are 20 repositories under data-harmonization topic.
pha4ge/hAMRonization
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
NPLinker/nplinker
A python framework for data mining microbial natural products by integrating genomics and metabolomics data
CoAxLab/pycombat
Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
harmonydata/harmony
The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.
cidgoh/pathogen-genomics-package
This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
ncsuSEAL/McGregor-et-al-2024
Code and sample data for McGregor et al., 2024
SCAI-BIO/datastew
Python library for intelligent data stewardship using Large Language Model (LLM) embeddings
SCAI-BIO/index
Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization
SCAI-BIO/tsnepad
AD & PD cohort variable distributions
maelstrom-research/ipaq
International Physical Activity Questionnaire (IPAQ) variables
harmonydata/harmonyapi
This is the source code for the Harmony project REST API
lodi-m/piccard
Visualizing demographic evolution using geographically inconsistent census data
harmonydata/harmonydata.github.io
Blog for NLP data harmonisation project Harmony, open source solution using Python for psychologists
NajiaAhmadi/VisualisationWithPython
Graphics for the article "Methods used in the development of Common Data Models for health data – a Scoping Review"
syedmfuad/geospatial_misc
Miscellaneous codes for harmonizing agricultural output and other agri-related data raster files and shapefiles. Extracts from raster files the grid-cell data by shapefile boundary.
dfornika/amrhike
Proof-of-concept for storing and querying harmonized AMR Genomic Analysis Results in datahike
syedmfuad/spatial_miscellaneous
Miscellaneous codes for spatial mapping and raster data manipulation