AMRfinder aminoacid reference lenght being saved in gene lenght field

[cimendes]

The amrfinder parsers are saving the aminoacid reference lenght in the reference_gene_lenght field

[fmaguire]

the amrfinderplus parser should save query amino acid length to input_protein_length if run using proteins or query gene length to input_gene_length if using gene as query.

This is doing what I expect using the two files in data/raw_outputs/amrfinder, does it look OK from your end?

[cimendes]

You're right. I put a silly value on my dummy file. Parser is working as intended! Sorry for the confusion!