phamidko
Immunology, HIV vaccine, CAR T cell gene therapy, Backend DevOps, Kubernetes // Bioinformatics // GPU TPU
Pinned Repositories
_jax_
go-ncRNA
non coding RNA structure inferences in Golang
rstudio-mofa2
Base Rstudio docker container for Multi-Omics Factor Analysis V2 (MOFA+)
phamidko's Repositories
phamidko/rstudio-mofa2
Base Rstudio docker container for Multi-Omics Factor Analysis V2 (MOFA+)
phamidko/_jax_
phamidko/go-ncRNA
non coding RNA structure inferences in Golang
phamidko/ann-benchmarks
Benchmarks of approximate nearest neighbor libraries in Python
phamidko/ansible_mongodb
phamidko/biodata
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
phamidko/cellbase
High-Performance NoSQL database and RESTful web services to access to most relevant biological data
phamidko/CGMM
Official repository of "Contextual Graph Markov Model: A Deep and Generative Approach to Graph Processing", ICML 2018
phamidko/codesnippets
phamidko/deeprank
Deep Learning for the ranking of protein-protein conformations
phamidko/etcd
Distributed reliable key-value store for the most critical data of a distributed system
phamidko/geometry-central
Applied 3D geometry in C++, with a focus on surface meshes.
phamidko/gnina
A deep learning framework for molecular docking
phamidko/go-operator
phamidko/Hackathon
Multi-omics studies are available here
phamidko/jx3-cluster
phamidko/jx3-infra
phamidko/log
phamidko/opencga
An Open Computational Genomics Analysis platform for big data processing and analysis in genomics
phamidko/opencga-cli
phamidko/opencga-operator
phamidko/phamidko.github.io
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
phamidko/plmc
Inference of couplings in proteins and RNAs from sequence variation
phamidko/rdkit-scripts
A collection of cheminformatics scripts that use rdkit
phamidko/rnaseq
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
phamidko/statisticalScaffold
phamidko/terraform-aws
phamidko/upwork-valhala
phamidko/Wochenende
A whole Genome/Metagenome Sequencing Alignment Pipeline
phamidko/zettaservicenow