Pinned Repositories
aros
Open Automated Robotic System for Biological Laboratories
bioimg-sciluigi-casestudy
An automated virtual machine setup, containing a use case for running workflows written in SciLuigi
cellprofiler-docker
Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image
CP-Chem-MoA
phil_LNP_modelling
Python code and jupyter notebooks to accompany the manuscript "Deep learning models for lipid-nanoparticle-based drug delivery"
plaid
PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.
plot_utils
Repo that groups utility functions for e.g. plotting of Conformal prediction metrics
robotlab
Cell painting and imaging with robots
sciluigi
A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular
squid
pharmb.io's Repositories
pharmbio/plot_utils
Repo that groups utility functions for e.g. plotting of Conformal prediction metrics
pharmbio/plaid
PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.
pharmbio/robotlab
Cell painting and imaging with robots
pharmbio/CP-Chem-MoA
pharmbio/imagedb
Image database for pharmbio microscope images
pharmbio/pharmbio-web
The Static (Hugo) website for pharmb.io
pharmbio/big-data_course
Material for the Big Data in life science course
pharmbio/big-data_deeplearning
Big data course, Deep learning repo
pharmbio/pharmbio-notebook
Docker containers for interactive notebook environments for rancher cluster
pharmbio/conformal-eval
Refactored version of the Plot_utils library, for generating a single installable distribution
pharmbio/cplogd-v2.0
cpLodD version 2.0 - using ChEMBL v33
pharmbio/nw-cp
A master thesis on using Graph Neural Networks and Network Analysis approach in morphological profiling of chemical perturbated cells
pharmbio/squid
pharmbio/declis
DNA-encoded chemical library information system
pharmbio/Assignment_3a_LeukemiaCells
Easier paths leukemia cells BDLS Assignment 3.a
pharmbio/cp_pipeline
pharmbio/cppipeline2
version 2 of cppipeline
pharmbio/DeepProfiler_Benjamin
DeepProfiler analysis scripts for RH30, Specs3k datasets
pharmbio/dorna-lab-automation
Server and WebGUI for Dorna control, built for the Laboratory Automation in Life Sciences course.
pharmbio/labdesign
Software for design of (robot)-lab experiments
pharmbio/Nima_Msc_Presentation
Nima's Master thesis final presentation on Intersecting Graph Representation Learning and Cell Profiling.
pharmbio/pharmbio_LaTeX_templates
A series of LaTeX templates used by us
pharmbio/pharmbio_package
A Python package automating routine pharmaceutical bioinformatics laboratory analyses and quality control checks.
pharmbio/pipelinegui
pharmbio/plaid-gui
pharmbio/robotvision
Machine vision system project for automated biological lab.
pharmbio/rstudio-docker
Dockerfile for rstudio server with python support
pharmbio/SC_analysis_Benjamin
Main analysis scripts of sc master thesis
pharmbio/SegMine
Playground for Segmentation and Data-mining
pharmbio/ULLA_AIinDD
ULLA AI in Drug Discovery course material