input of phenopacket message from string not working
pnrobinson opened this issue · 1 comments
pnrobinson commented
We are getting a String version of the phenopacket that appears correct, but the ingest to Message is not working. Here is a short version
public Message fromString(String msg) throws PhenopacketValidatorInputException {
try {
Phenopacket.Builder builder = Phenopacket.newBuilder();
TextFormat.Parser parser = TextFormat.Parser.newBuilder().build();
parser.merge(msg, builder);
return builder.build();
} catch (TextFormat.ParseException e ) {
throw new PhenopacketValidatorInputException("Could not decode Message: " + e.getMessage());
}
}
But we get
Could not decode Message: Expected identifier. Found '{'
Not that we have com.google.protobuf.TextFormat and version 2 Phenopacket in this code
pnrobinson commented
Fixed, this should have been
Phenopacket.Builder builder = Phenopacket.newBuilder();
JsonFormat.parser().merge(jsonString, builder);
message = builder.build();