philarevalo

Postdoc, microbiologist, and genome wrangler.

Pinned Repositories

BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
Language:Java00
default_environment
Code and documentation of my preferred default environment
Language:Batchfile00
dnds_COGenT
Pipeline for calculating dn/ds.
Language:Perl10
ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
Language:Python00
NeverSink-Filter
This is a lootfilter for the game "Path of Exile". It hides low value items, uses a markup-scheme and sounds to highlight expensive gear and is based on economy data mining.
00
Perth2009-DMS-Manuscript
manuscript for deep mutational scanning of Perth/2009 H3N2 HA
Language:Jupyter Notebook00
philarevalo.github.io
Phil Arevalo's personal website
Language:HTML00
PopCOGenT
Microbial Populations as Clusters Of Gene Transfer
Language:C++42 8 3512
RiboTree
Pipeline to make a phylogeny from ribosomal proteins pulled from microbial genomes
Language:Python6 1 31
rmarkdown
Dynamic Documents for R
Language:R1 1 00

philarevalo/PopCOGenT
Microbial Populations as Clusters Of Gene Transfer
Language:C++42 8 3512
philarevalo/RiboTree
Pipeline to make a phylogeny from ribosomal proteins pulled from microbial genomes
Language:Python6 1 31
philarevalo/dnds_COGenT
Pipeline for calculating dn/ds.
Language:Perl10
philarevalo/rmarkdown
Dynamic Documents for R
Language:R1 1 00
philarevalo/BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
Language:Java00
philarevalo/default_environment
Code and documentation of my preferred default environment
Language:Batchfile00
philarevalo/ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
Language:Python00
philarevalo/NeverSink-Filter
This is a lootfilter for the game "Path of Exile". It hides low value items, uses a markup-scheme and sounds to highlight expensive gear and is based on economy data mining.
00
philarevalo/Perth2009-DMS-Manuscript
manuscript for deep mutational scanning of Perth/2009 H3N2 HA
Language:Jupyter Notebook00
philarevalo/philarevalo.github.io
Phil Arevalo's personal website
Language:HTML00
philarevalo/sem-bio-wes-cis-263