Dual U-Net Nuclei Segmentation solution.
Download and unzip in a local folder (dataset_root
):
https://raw.githubusercontent.com/AakashSudhakar/2018-data-science-bowl/master/compressed_files/stage1_test.zip https://github.com/lopuhin/kaggle-dsbowl-2018-dataset-fixes/archive/master/stage1_train.zip
Trained models are in model_train_unet_256x256_nuclei_2px_contours_cyclic_lr.zip
Create a conda environment as defined in dlwin36.yml or requirements.txt
Run the dataset_prep.ipynb jupyter notebook after having set dataset_root
to the proper dataset folder.
Run the model_train_unet_256x256_nuclei_2px_contours_cyclic_lr.ipynb jupyter notebook after having set dataset_root
to the proper dataset folder.