This is the Official Geneset (OGS) for Photinus pyralis (Big Dipper Firefly)
As reported in this preprint: https://www.biorxiv.org/content/early/2018/02/25/237586
Genome version: Ppyr1.3
Geneset version: PPYR_OGS1.0
This GIT repository is meant to keep track of any changes to the OGS, and hopefully have a useful audit log which describes what changes occured.
Also see: fireflybase.org
See Releases
(Executable from your local command line)
Report issues here
- Fork this repository
- Download and edit the PPYR_OGS*.gff3 file
- Sort the GFF3 file and regenerate dependent files (CDS, mRNA, peptide) files using the utility_scripts/sort-and-regenerate-OGS-GFF.sh script.
- Commit your changes back to your repository, with an informative message for the changes that were made
- Submit a pull request to this repository
- If all looks good I'll merge the pull request
Get a proper relational database ala Chado, and/or a collaborative GUI editing interface, ala Apollo.
Data files (e.g. geneset .fa.gz files, gff3 files) are licensed under the Creative Commons CC-BY-SA 4.0 International license. Software (e.g. BASH scripts) is licensed under the MIT license